Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015933512.1_cds_XP_016479770.1_71279
CDS Infomation

[gene=LOC107801021] [db_xref=GeneID:107801021] [protein=pentatricopeptide repeat-containing protein At4g16835, mitochondrial-like] [protein_id=XP_016479770.1] [location=complement(join(9878..10383,10446..11970))] [gbkey=CDS]
Sequence

ATGTACTATCAACTTCACTTTAGAAGCAAAATTTGCTCCTTTCCCTCCTTATGCAAACGC
CATTTTCGTATCTCTTTTAGCTCCTTTTCTCAAATCCCAGATGACAATTCAAACCCAGAG
ACATTACCTTCACCTCAATCCCAGTTGGTACCCCCCAGTAACGTAATTACACAACCAAAA
TTTTCAAGAAATGGCCACTTATCGCACAAAACTAGATACTCTGAGCAACCTGAAACCAAC
GATGTGGTATTATCAAACAAGAAAATTACCAGTTATATTAGACGTGGGGATTTAGATTCC
GCGTTTAATGTTTTCAATAGCGTGAAGGTTAAGACAGTGGTCACGTGGAATTCAATCTTG
GCTGGCTTTTCAAGGAAGCCCGGGTACGTTGAAGAAGCTCGCCAACTGTTTGAAAAAATT
CCTGAACCGAATGTTGTGTCGTATAATACTATGTTAGCTTGCTATATGCGAAATTCTGAT
ATCGAGGCTTCTAAGAATTTCTTTGATCAAATGCCGGTTAAAGATGTTGCTTCCTGGAAC
ACCATGATTTCAGGTTTCTCTCAGAATGGGCTGATGGCTGAAGCGGAAGAGTTGTTTCGG
GCAATGCCGGTGAGGAATGAGGTTACGTGGAATGCTATGGTAGCTGGGTATGTTGAGTCT
GGGGAAGTGGAATCAGCATTGGAGTTGTTTAGTGAAGCTCCTGTGAAAGGTGTGATTGCT
AGGACAGCGATTGTGACGGGGTATATGAGATCAGGAAATGTTGAAATGGCAGAGAAGATG
TTTCGAGAGATGCCAGAGAAGAGTATGGTAACATGGAACACCATGATTTCAGGTTACATT
GAGAATGGGAGAGCAGAGGATGGTATGAAGTTGTTCAAGAAAATGATGGGATCGGGTGTA
AAGGCTAATGACTCGACATTGAGTAGTCTCTTACTAGGTTGTAGTAATTTATCTGCATTG
AAATTGGGGAAGCAAGTTCATCAGCACGTTGTGAAGTCCCCTCTGAACTTGGATATGACG
GTGGGGACTTCATTGAGTAGCATGTATAGCAAGTGTGGAGTTTTGGAGGATGCGTGGAAA
TTATTTCTTGAGATGCCAAGAAAGGATGTCGTCACTTGGAATGCAATGATTTCAGGGTAT
GCTCAACACGGGGAAAGCAAGAAGGCCCTTCACTTGTTCGATGAGATGAGGAGTAAAGGA
ATAAAACCAGATTGGATAACGTTTGTTGGAGTTCTATCAGCCTGTAACCATGCAGGTTTT
GTCAATCTTGGTATTCAATGTTTTGAGCAAATGCAGAATGATTATGGAATTAAGCCAAAA
CCAGACCATTACACTTGTATGGTTGACCTCCTTGGACGAGCTGGCAAGCTAAATGAAGCT
GTGGATTTGATAACAAAAATGCATTTCAAACCCCATATATCATTATTTGGAGCACTTTTG
GGTGCTTGTAGGATCCACAGAAACTTAGAAGTGGCAGAATTTGCTGCCAAAAACTTACTT
AGCCTCGAACCTACCAATGCAGCAGGATATGTTCAACTTGCTAATGTTTATGCAGCCAAG
AACCATTGGGAAGGTGTTTCTATAGTTAGAAAGTCAATGAAAGAGAACAAAGTTATAAAA
ACACCGGGATATAGTTGGATGGAGGTTGGAAGAGTGATCCATGAGTTCAGATCAGGGGAT
AGACTTCATCCAGATTTGGAAAGCATACACATGAAACTAAAAGATCTTGAGAAGAAAATG
AAGGTAGCGGGTTATGTTCCTGATCTGGACTCTGCATTACATGATGTAGCAGAGGAACAG
AAAGAGCAGCTACTTCTCTGGCACAGTGAGAAACTAGCAATTGCCTTTGGTTTAATAAAA
TTACCACCAGGAATGCCAATTAGGATATTCAAGAATCTCAGAGTTTGTGGAGACTGCCAC
CAAGCCACTAAAGTTATATCAGCAATAGAAAATAGGGAAATCATTGTCAGAGATACAACT
AGGTTTCACCATTTCAAAAATGGAGTTTGTTCTTGTGGCGATTACTGGTAA

Peptide Sequence

PEP ID

XP_016479770.1
PEP Infomation

PREDICTED: pentatricopeptide repeat-containing protein At4g16835, mitochondrial-like [Nicotiana tabacum]
Sequence

MYYQLHFRSKICSFPSLCKRHFRISFSSFSQIPDDNSNPETLPSPQSQLVPPSNVITQPK
FSRNGHLSHKTRYSEQPETNDVVLSNKKITSYIRRGDLDSAFNVFNSVKVKTVVTWNSIL
AGFSRKPGYVEEARQLFEKIPEPNVVSYNTMLACYMRNSDIEASKNFFDQMPVKDVASWN
TMISGFSQNGLMAEAEELFRAMPVRNEVTWNAMVAGYVESGEVESALELFSEAPVKGVIA
RTAIVTGYMRSGNVEMAEKMFREMPEKSMVTWNTMISGYIENGRAEDGMKLFKKMMGSGV
KANDSTLSSLLLGCSNLSALKLGKQVHQHVVKSPLNLDMTVGTSLSSMYSKCGVLEDAWK
LFLEMPRKDVVTWNAMISGYAQHGESKKALHLFDEMRSKGIKPDWITFVGVLSACNHAGF
VNLGIQCFEQMQNDYGIKPKPDHYTCMVDLLGRAGKLNEAVDLITKMHFKPHISLFGALL
GACRIHRNLEVAEFAAKNLLSLEPTNAAGYVQLANVYAAKNHWEGVSIVRKSMKENKVIK
TPGYSWMEVGRVIHEFRSGDRLHPDLESIHMKLKDLEKKMKVAGYVPDLDSALHDVAEEQ
KEQLLLWHSEKLAIAFGLIKLPPGMPIRIFKNLRVCGDCHQATKVISAIENREIIVRDTT
RFHHFKNGVCSCGDYW

Transcript Sequence

Gene sequence data has not been registered.